PH01001235G0510's details annotation
1.Annotation
ICBR annotation: OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed
Blast result AT1G10390 : 4.00E-125
Blast annotation: Nucleoporin autopeptidase
2.Location
Scaffold: PH01001235
Strand: +
| Region | Start | End |
| gene | 332080 | 341653 |
| mRNA | 332080 | 341653 |
| exon | 332080 | 332180 |
| exon | 332215 | 332315 |
| exon | 332449 | 332600 |
| exon | 332636 | 332718 |
| exon | 333451 | 333530 |
| exon | 334301 | 334381 |
| exon | 336153 | 336189 |
| exon | 336966 | 337277 |
| exon | 337777 | 338274 |
| exon | 338441 | 338583 |
| exon | 338749 | 338815 |
| exon | 338911 | 338971 |
| exon | 339393 | 339531 |
| exon | 340454 | 340567 |
| exon | 340676 | 340853 |
| exon | 340994 | 341653 |
| CDS | 332174 | 332180 |
| CDS | 332215 | 332315 |
| CDS | 332449 | 332600 |
| CDS | 332636 | 332718 |
| CDS | 333451 | 333530 |
| CDS | 334301 | 334381 |
| CDS | 336153 | 336189 |
| CDS | 336966 | 337277 |
| CDS | 337777 | 338274 |
| CDS | 338441 | 338583 |
| CDS | 338749 | 338815 |
| CDS | 338911 | 338971 |
| CDS | 339393 | 339531 |
| CDS | 340454 | 340567 |
| CDS | 340676 | 340853 |
| CDS | 340994 | 341607 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001272 | |
| coexpression network | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK) nucleolus, nuclear pore, RNA_transport |
| coexpression network | CFinderM001678 | mRNA_cleavage_and_polyadenylation_specificity_factor_complex mRNA cleavage, protein retention in ER lumen, mRNA_polyadenylation RNA metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity ER retention sequence binding, |
| coexpression network | CFinderM001739 | mannose biosynthetic process, phosphomannomutase activity, ARF Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) B3-ARF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00225.22 | Kinesin | 3 | 63 |
| PF04096.13 | Nucleoporin2 | 742 | 882 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | nuclear pore complex protein Nup98-Nup96 | ko03013 | K14297 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003777 | microtubule motor activity |
| GO:0005524 | ATP binding |
| GO:0005643 | nuclear pore |
| GO:0005875 | microtubule associated complex |
| GO:0006810 | transport |
| GO:0007018 | microtubule-based movement |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.