PH01000624G0580's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 18, putative, expressed
Blast result AT1G12470 : 6.00E-164
Blast annotation: zinc ion binding
2.Location
Scaffold: PH01000624
Strand: +
| Region | Start | End |
| gene | 446866 | 455066 |
| mRNA | 446866 | 455066 |
| exon | 446866 | 449349 |
| exon | 449724 | 449860 |
| exon | 449958 | 450053 |
| exon | 450440 | 450507 |
| exon | 450628 | 450729 |
| exon | 451436 | 451537 |
| exon | 452448 | 452586 |
| exon | 452714 | 452854 |
| exon | 452936 | 453055 |
| exon | 453226 | 453282 |
| exon | 453383 | 453442 |
| exon | 453810 | 453917 |
| exon | 454049 | 454209 |
| exon | 454717 | 455066 |
| CDS | 449172 | 449349 |
| CDS | 449724 | 449860 |
| CDS | 449958 | 450053 |
| CDS | 450440 | 450507 |
| CDS | 450628 | 450729 |
| CDS | 451436 | 451537 |
| CDS | 452448 | 452586 |
| CDS | 452714 | 452854 |
| CDS | 452936 | 453055 |
| CDS | 453226 | 453282 |
| CDS | 453383 | 453442 |
| CDS | 453810 | 453917 |
| CDS | 454049 | 454209 |
| CDS | 454717 | 454828 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK) nucleolus, nuclear pore, RNA_transport |
| coexpression network | CFinderM001527 | PHD Transcription_Regulator(from iTAK) guanyl-nucleotide exchange factor activity, |
| coexpression network | CFinderM001695 | C3H Transcription_Regulator(from PlantTFDB) DNA photolyase activity, |
| coexpression network | CFinderM001702 | ribosome biogenesis, nucleolus, eukaryotic translation initiation factor 3 complex, RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05131.13 | Pep3_Vps18 | 215 | 366 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.