PH01000116G0150's details annotation
1.Annotation
ICBR annotation: esterase, putative, expressed
Blast result AT1G33990 : 9.00E-126
Blast annotation: methyl esterase 14
2.Location
Scaffold: PH01000116
Strand: -
| Region | Start | End |
| gene | 134293 | 137554 |
| mRNA | 134293 | 137554 |
| exon | 134293 | 134824 |
| exon | 134947 | 135081 |
| exon | 135161 | 135304 |
| exon | 135391 | 135630 |
| exon | 137237 | 137554 |
| CDS | 134495 | 134824 |
| CDS | 134947 | 135081 |
| CDS | 135161 | 135304 |
| CDS | 135391 | 135630 |
| CDS | 137237 | 137515 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001156 | single-stranded DNA binding, DNA_replication |
| coexpression network | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK) nucleolus, nuclear pore, RNA_transport |
| coexpression network | CFinderM001874 | Endocytosis Jumonji Transcription_Regulator(from iTAK) bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12697.6 | Abhydrolase_6 | 106 | 345 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.