|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | spliceosomal complex, | 0.004119137 | GO:0005681 | | mitosis, | 0.018541913 | GO:0007067 | | Spliceosome | 0.035474674 | KEGG | | protein dephosphorylation, | 0.043041949 | GO:0006470 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000096G0370 | Pentatricopeptide repeat (PPR) superfamily protein | AT5G61990 (4.00E-118) | | PH01000122G0060 | kinase associated protein phosphatase | AT5G19280 (8.20E-73) | | PH01000186G0680 | mRNA splicing factor, thioredoxin-like U5 snRNP | AT5G08290 (5.70E-79) | | PH01000750G0240 | ubiquitin-protein ligases | AT2G39810 (4.80E-92) | | PH01001722G0060 | - | AT4G39420 (0.00E+00) | | PH01004638G0100 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | AT3G63400 (3.50E-66) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM001390 | dTMP biosynthetic process,
dihydrofolate reductase activity,
thymidylate synthase activity,
mRNA_surveillance_pathway
| details | | CFinderM001451 | Protein_processing_in_endoplasmic_reticulum
Protein_export
mitosis,
protein retention in ER lumen,
ER retention sequence binding,
spliceosomal complex,
glycerol ether metabolic process,
isomerase activity,
| details | | CFinderM001492 | mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
| details | | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
| details | | CFinderM001527 | PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
| details | | CFinderM001554 | protein retention in ER lumen,
ER retention sequence binding,
peptidyl-prolyl cis-trans isomerase activity,
acid-amino acid ligase activity,
| details | | CFinderM001580 | iron-sulfur cluster assembly,
RNA processing,
| details | | CFinderM001636 | GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001702 | ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
| details | | CFinderM001732 | | details | | CFinderM001810 | mitosis,
spliceosomal complex,
Spliceosome
| details |
4.Expression profilings |
