Annotation of co-expression genes

PH01000186G0680's details annotation

1.Annotation

ICBR annotation: mitosis protein dim1, putative, expressed

Blast result AT5G08290 : 5.70E-79
Blast annotation: mRNA splicing factor, thioredoxin-like U5 snRNP

2.Location

Scaffold: PH01000186
Strand: -

RegionStartEnd
gene476760481544
mRNA476760481544
exon476760478435
exon481042481544
CDS478127478435
CDS481042481161

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001451Protein_processing_in_endoplasmic_reticulum
Protein_export
mitosis,
protein retention in ER lumen,
ER retention sequence binding,
spliceosomal complex,
glycerol ether metabolic process,
isomerase activity,
coexpression networkCFinderM001803spliceosomal complex,
mitosis,
Spliceosome
protein dephosphorylation,
coexpression networkCFinderM001810mitosis,
spliceosomal complex,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02966.15DIM14136

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SpliceosomeU5 snRNP protein, DIM1 familyko03041K12859

10.Gene Ontology

GO AccessionGO Annotation
GO:0005681spliceosomal complex
GO:0007067mitosis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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