PH01001722G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G39420 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01001722
Strand: -
| Region | Start | End |
| gene | 24268 | 34589 |
| mRNA | 24268 | 34589 |
| exon | 24268 | 24780 |
| exon | 24871 | 24987 |
| exon | 25092 | 25559 |
| exon | 25636 | 26068 |
| exon | 26179 | 26498 |
| exon | 26594 | 26653 |
| exon | 26735 | 27295 |
| exon | 27795 | 27992 |
| exon | 28454 | 28526 |
| exon | 29746 | 29951 |
| exon | 30946 | 31587 |
| exon | 32516 | 32809 |
| exon | 32961 | 33146 |
| exon | 33354 | 33842 |
| exon | 33931 | 34589 |
| CDS | 24655 | 24780 |
| CDS | 24871 | 24987 |
| CDS | 25092 | 25559 |
| CDS | 25636 | 26068 |
| CDS | 26179 | 26498 |
| CDS | 26594 | 26653 |
| CDS | 26735 | 27295 |
| CDS | 27795 | 27992 |
| CDS | 28454 | 28526 |
| CDS | 29746 | 29951 |
| CDS | 30946 | 31587 |
| CDS | 32516 | 32809 |
| CDS | 32961 | 33146 |
| CDS | 33354 | 33842 |
| CDS | 33931 | 34035 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001390 | dTMP biosynthetic process, dihydrofolate reductase activity, thymidylate synthase activity, mRNA_surveillance_pathway |
| coexpression network | CFinderM001803 | spliceosomal complex, mitosis, Spliceosome protein dephosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.