PH01004638G0100's details annotation
1.Annotation
ICBR annotation: cyclophilin, putative, expressed
Blast result AT3G63400 : 3.50E-66
Blast annotation: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
2.Location
Scaffold: PH01004638
Strand: -
| Region | Start | End |
| gene | 71013 | 78536 |
| mRNA | 71013 | 78536 |
| exon | 71013 | 71816 |
| exon | 72625 | 72705 |
| exon | 72777 | 73112 |
| exon | 73256 | 73442 |
| exon | 74234 | 74337 |
| exon | 74426 | 74759 |
| exon | 74841 | 75001 |
| exon | 75400 | 75517 |
| exon | 75645 | 75683 |
| exon | 75772 | 75796 |
| exon | 76029 | 76117 |
| exon | 76962 | 77016 |
| exon | 77133 | 77230 |
| exon | 78008 | 78536 |
| CDS | 71462 | 71816 |
| CDS | 72625 | 72705 |
| CDS | 72777 | 73112 |
| CDS | 73256 | 73442 |
| CDS | 74234 | 74337 |
| CDS | 74426 | 74759 |
| CDS | 74841 | 75001 |
| CDS | 75400 | 75517 |
| CDS | 75645 | 75683 |
| CDS | 75772 | 75796 |
| CDS | 76029 | 76117 |
| CDS | 76962 | 77016 |
| CDS | 77133 | 77230 |
| CDS | 78008 | 78092 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001554 | protein retention in ER lumen, ER retention sequence binding, peptidyl-prolyl cis-trans isomerase activity, acid-amino acid ligase activity, |
| coexpression network | CFinderM001580 | iron-sulfur cluster assembly, RNA processing, |
| coexpression network | CFinderM001636 | GPI anchor metabolic process, double-strand break repair, protein folding, nucleus, DNA metabolic process, exonuclease activity, endonuclease activity, phosphoprotein phosphatase activity, manganese ion binding, peptidyl-prolyl cis-trans isomerase activity, |
| coexpression network | CFinderM001803 | spliceosomal complex, mitosis, Spliceosome protein dephosphorylation, |
| coexpression network | CFinderM001810 | mitosis, spliceosomal complex, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00160.20 | Pro_isomerase | 46 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
| GO:0006457 | protein folding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.