|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | mitochondrial inner membrane, | 0.006866302 | GO:0005743 | | mitochondrial inner membrane presequence translocase complex, | 0.006866302 | GO:0005744 | | nucleolus, | 0.006866302 | GO:0005730 | | Ubiquitin_mediated_proteolysis | 0.025238006 | KEGG | | ribosome biogenesis, | 0.029847416 | GO:0042254 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000110G0590 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT1G16650 (1.20E-67) | | PH01000155G0370 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | AT1G55900 (8.50E-53) | | PH01000274G0530 | ubiquiting-conjugating enzyme 2 | AT2G02760 (2.50E-82) | | PH01000426G0150 | pescadillo-related | AT5G14520 (0.00E+00) | | PH01000750G0240 | ubiquitin-protein ligases | AT2G39810 (4.80E-92) | | PH01002541G0130 | FK506 BINDING PROTEIN 53 | AT4G25340 (1.30E-19) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000495 | SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
| details | | CFinderM000646 | ion transport,
Ubiquitin_mediated_proteolysis
membrane,
| details | | CFinderM000671 | SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
| details | | CFinderM000954 | defense response,
ADP_binding
acid phosphatase activity,
Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
| details | | CFinderM001129 | nucleus,
double-strand break repair,
DNA metabolic process,
RNA_polymerase
Pyrimidine_metabolism
Purine_metabolism
| details | | CFinderM001444 | nucleolus,
SNARE_interactions_in_vesicular_transport
Homologous_recombination
SOS_response
DNA metabolic process,
ribosome biogenesis,
single-stranded DNA binding,
DNA-dependent ATPase activity,
| details | | CFinderM001473 | GPI anchor metabolic process,
DNA recombination,
RNA_degradation
| details | | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
| details | | CFinderM001527 | PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
| details | | CFinderM001580 | iron-sulfur cluster assembly,
RNA processing,
| details | | CFinderM001636 | GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001702 | ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
| details | | CFinderM001732 | | details | | CFinderM001803 | spliceosomal complex,
mitosis,
Spliceosome
protein dephosphorylation,
| details | | CFinderM001810 | mitosis,
spliceosomal complex,
Spliceosome
| details | | CFinderM001839 | GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
| details | | CFinderM001855 | Base_excision_repair
GPI anchor metabolic process,
DNA recombination,
| details | | CFinderM001869 | DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
| details |
4.Expression profilings |
