PH01001219G0420's details annotation
1.Annotation
ICBR annotation: blue-light photoreceptor PHR2, putative, expressed
Blast result AT2G47590 : 8.00E-113
Blast annotation: photolyase/blue-light receptor 2
2.Location
Scaffold: PH01001219
Strand: -
| Region | Start | End |
| gene | 292097 | 296306 |
| mRNA | 292097 | 296306 |
| exon | 292097 | 293117 |
| exon | 293443 | 293541 |
| exon | 293652 | 293881 |
| exon | 294538 | 294588 |
| exon | 294969 | 296306 |
| CDS | 293030 | 293117 |
| CDS | 293443 | 293541 |
| CDS | 293652 | 293881 |
| CDS | 294538 | 294588 |
| CDS | 294969 | 295223 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000043 | C3H Transcription_Regulator(from PlantTFDB) DNA repair, |
| coexpression network | CFinderM001399 | RNA_transport Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, Base_excision_repair |
| coexpression network | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, ribonuclease H activity, DNA photolyase activity, cytokinesis aromatic amino acid family biosynthetic process, microtubule cytoskeleton organization, RNA metabolic process, DNA_replication microtubule binding, ubiquitin ligase complex, Ubiquitin_mediated_proteolysis protein ubiquitination, DNA repair, |
| coexpression network | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK) nucleolus, nuclear pore, RNA_transport |
| coexpression network | CFinderM001625 | SNF2 Transcription_Regulator(from iTAK) cellular_homeostasis mitochondrial outer membrane, RNA methylation, Homologous_recombination |
| coexpression network | CFinderM001695 | C3H Transcription_Regulator(from PlantTFDB) DNA photolyase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00875.17 | DNA_photolyase | 113 | 271 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003913 | DNA photolyase activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.