PH01000783G0230's details annotation
1.Annotation
ICBR annotation: vesicle transport v-SNARE protein, putative, expressed
Blast result AT5G39510 : 2.70E-80
Blast annotation: Vesicle transport v-SNARE family protein
2.Location
Scaffold: PH01000783
Strand: -
| Region | Start | End |
| gene | 176113 | 181848 |
| mRNA | 176113 | 181848 |
| exon | 176113 | 177006 |
| exon | 178107 | 178277 |
| exon | 179554 | 179586 |
| exon | 179682 | 179870 |
| exon | 180167 | 180225 |
| exon | 180339 | 181848 |
| CDS | 176854 | 177006 |
| CDS | 178107 | 178277 |
| CDS | 179554 | 179586 |
| CDS | 179682 | 179870 |
| CDS | 180167 | 180225 |
| CDS | 180339 | 180432 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport WASH_complex actin cytoskeleton, spliceosomal complex, pre-mRNA_intronic_binding |
| coexpression network | CFinderM000804 | cysteine synthase activity, chorismate mutase activity, Phenylalanine,_tyrosine_and_tryptophan_biosynthesis SET Transcription_Regulator(from iTAK) cysteine biosynthetic process from serine, aromatic amino acid family biosynthetic process, chorismate metabolic process, SNARE_interactions_in_vesicular_transport Sulfur_metabolism Cysteine_and_methionine_metabolism |
| coexpression network | CFinderM001444 | nucleolus, SNARE_interactions_in_vesicular_transport Homologous_recombination SOS_response DNA metabolic process, ribosome biogenesis, single-stranded DNA binding, DNA-dependent ATPase activity, |
| coexpression network | CFinderM001549 | SNARE_interactions_in_vesicular_transport vesicle-mediated transport, intracellular protein transport, SNAP receptor activity, structural molecule activity, |
| coexpression network | CFinderM001627 | SET Transcription_Regulator(from iTAK) intracellular protein transport, SNARE_interactions_in_vesicular_transport mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05008.14 | V-SNARE | 12 | 90 |
| PF12352.7 | V-SNARE_C | 128 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| SNARE interactions in vesicular transport | vesicle transport through interaction with t-SNAREs 1 | ko04130 | K08493 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006886 | intracellular protein transport |
| GO:0016020 | membrane |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.