PH01001634G0410's details annotation
1.Annotation
ICBR annotation: cwfJ-like family protein, putative, expressed
Blast result AT5G56900 : 2.00E-175
Blast annotation: CwfJ-like family protein / zinc finger (CCCH-type) family protein
2.Location
Scaffold: PH01001634
Strand: -
| Region | Start | End |
| gene | 314237 | 321783 |
| mRNA | 314237 | 321783 |
| exon | 314237 | 315177 |
| exon | 316740 | 316792 |
| exon | 317471 | 317519 |
| exon | 317733 | 317878 |
| exon | 318336 | 318432 |
| exon | 318565 | 318862 |
| exon | 318977 | 319395 |
| exon | 319670 | 319787 |
| exon | 319995 | 320056 |
| exon | 320266 | 320372 |
| exon | 320620 | 320902 |
| exon | 320982 | 321783 |
| CDS | 314689 | 315177 |
| CDS | 316740 | 316792 |
| CDS | 317471 | 317519 |
| CDS | 317733 | 317878 |
| CDS | 318336 | 318432 |
| CDS | 318565 | 318862 |
| CDS | 318977 | 319395 |
| CDS | 319670 | 319787 |
| CDS | 319995 | 320056 |
| CDS | 320266 | 320372 |
| CDS | 320620 | 320902 |
| CDS | 320982 | 321080 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000043 | C3H Transcription_Regulator(from PlantTFDB) DNA repair, |
| coexpression network | CFinderM000940 | nucleic acid binding, Ribosome_biogenesis_in_eukaryotes |
| coexpression network | CFinderM001195 | nucleic acid binding, ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) C3H Transcription_Regulator(from PlantTFDB) endoplasmic reticulum, response to hormone stimulus, glycerol ether metabolic process, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04677.14 | CwfJ_C_1 | 364 | 478 |
| PF04676.13 | CwfJ_C_2 | 510 | 559 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003824 | catalytic activity |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.