Annotation of co-expression genes

PH01000077G1210's details annotation

1.Annotation

ICBR annotation: ribosomal protein, putative, expressed

Blast result AT2G09990 : 2.20E-60
Blast annotation: Ribosomal protein S5 domain 2-like superfamily protein

2.Location

Scaffold: PH01000077
Strand: -

RegionStartEnd
gene757799758985
mRNA757799758985
exon757799758985
CDS758455758760

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,
coexpression networkCFinderM000838Ribosome
translation,
structural constituent of ribosome,
methylation,
large ribosomal subunit,
intracellular,
nucleobase-containing compound metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00380.18Ribosomal_S917149

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ribosomesmall subunit ribosomal protein S16eko03011K02960

10.Gene Ontology

GO AccessionGO Annotation
GO:0003735structural constituent of ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0006412translation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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