PH01000078G0200's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT5G15790 : 1.20E-32
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000078
Strand: -
| Region | Start | End |
| gene | 141163 | 148189 |
| mRNA | 141163 | 148189 |
| exon | 141163 | 142235 |
| exon | 142382 | 142491 |
| exon | 142948 | 143353 |
| exon | 143604 | 143640 |
| exon | 143966 | 144222 |
| exon | 146021 | 146188 |
| exon | 147259 | 148189 |
| CDS | 142149 | 142235 |
| CDS | 142382 | 142491 |
| CDS | 142948 | 143353 |
| CDS | 143604 | 143640 |
| CDS | 143966 | 144222 |
| CDS | 146021 | 146188 |
| CDS | 147259 | 147534 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000797 | threonyl-tRNA aminoacylation, tRNA aminoacylation, microtubule cytoskeleton organization, cytokinesis Aminoacyl-tRNA_biosynthesis Ribosome_biogenesis_in_eukaryotes threonine-tRNA ligase activity, cellular amino acid metabolic process, tRNA aminoacylation for protein translation, ligase activity, forming aminoacyl-tRNA and related compounds, microtubule binding, |
| coexpression network | CFinderM001622 | Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, aminoacyl-tRNA ligase activity, cytoplasm, threonyl-tRNA aminoacylation, ATP binding, tyrosine-tRNA ligase activity, threonine-tRNA ligase activity, tRNA aminoacylation, protein catabolic process, ATP-dependent peptidase activity, ligase activity, forming aminoacyl-tRNA and related compounds, |
| coexpression network | CFinderM001684 | heme_a_biosynthetic_process peroxisomal membrane, mitochondrial outer membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity |
| coexpression network | CFinderM001744 | Ribosome_biogenesis_in_eukaryotes Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, threonine-tRNA ligase activity, tRNA aminoacylation, tRNA aminoacylation for protein translation, cellular protein metabolic process, RNA processing, ligase activity, forming aminoacyl-tRNA and related compounds, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00036.31 | EF-hand_1 | 126 | 149 |
| PF13639.5 | zf-RING_2 | 375 | 416 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.