PH01000079G1850's details annotation
1.Annotation
ICBR annotation: OsFBK5 - F-box domain and kelch repeat containing protein, expressed
Blast result AT3G61590 : 4.00E-135
Blast annotation: Galactose oxidase/kelch repeat superfamily protein
2.Location
Scaffold: PH01000079
Strand: -
| Region | Start | End |
| gene | 1255855 | 1258479 |
| mRNA | 1255855 | 1258479 |
| exon | 1255855 | 1258479 |
| CDS | 1256453 | 1257811 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000050 | protein complex, microtubule, structural constituent of cytoskeleton, microtubule-based process, protein polymerization, Phagosome GTP_catabolic_process glycine cleavage complex, glycine decarboxylation via glycine cleavage system, GTPase activity, GTP binding, glycine catabolic process, Glyoxylate_and_dicarboxylate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 92 | 133 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.