PH01000083G1470's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G75140 : 3.00E-104
Blast annotation: -
2.Location
Scaffold: PH01000083
Strand: -
| Region | Start | End |
| gene | 917492 | 921137 |
| mRNA | 917492 | 921137 |
| exon | 917492 | 920227 |
| exon | 920271 | 921137 |
| CDS | 918520 | 920227 |
| CDS | 920271 | 920440 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000096 | NF-X1 Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-Xa (from iTAK) Endocytosis GATA Transcription_Regulator(from PlantTFDB) C2C2-GATA Transcription_Regulator(from iTAK) GRAS Transcription_Regulator(from PlantTFDB) vesicle docking involved in exocytosis, |
| coexpression network | CFinderM000208 | Endocytosis vesicle docking involved in exocytosis, GATA Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) C2C2-GATA Transcription_Regulator(from iTAK) RLK-Pelle_L-LEC (from iTAK) GRAS Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.