PH01000083G1700's details annotation
1.Annotation
ICBR annotation: chaperone protein dnaJ, putative, expressed
Blast result AT5G48030 : 1.40E-85
Blast annotation: gametophytic factor 2
2.Location
Scaffold: PH01000083
Strand: -
| Region | Start | End |
| gene | 1045692 | 1055830 |
| mRNA | 1045692 | 1055830 |
| exon | 1045692 | 1046430 |
| exon | 1046499 | 1046565 |
| exon | 1047053 | 1047101 |
| exon | 1047518 | 1047650 |
| exon | 1047972 | 1048041 |
| exon | 1048157 | 1048205 |
| exon | 1048292 | 1048348 |
| exon | 1049022 | 1049093 |
| exon | 1049200 | 1049291 |
| exon | 1049381 | 1049453 |
| exon | 1050551 | 1050672 |
| exon | 1051373 | 1051447 |
| exon | 1051703 | 1051790 |
| exon | 1051868 | 1051918 |
| exon | 1052486 | 1052611 |
| exon | 1052917 | 1052955 |
| exon | 1053050 | 1053133 |
| exon | 1054503 | 1054594 |
| exon | 1054694 | 1054774 |
| exon | 1054864 | 1055830 |
| CDS | 1046331 | 1046430 |
| CDS | 1046499 | 1046565 |
| CDS | 1047053 | 1047101 |
| CDS | 1047518 | 1047650 |
| CDS | 1047972 | 1048041 |
| CDS | 1048157 | 1048205 |
| CDS | 1048292 | 1048348 |
| CDS | 1049022 | 1049093 |
| CDS | 1049200 | 1049291 |
| CDS | 1049381 | 1049453 |
| CDS | 1050551 | 1050672 |
| CDS | 1051373 | 1051447 |
| CDS | 1051703 | 1051790 |
| CDS | 1051868 | 1051918 |
| CDS | 1052486 | 1052611 |
| CDS | 1052917 | 1052955 |
| CDS | 1053050 | 1053133 |
| CDS | 1054503 | 1054594 |
| CDS | 1054694 | 1054774 |
| CDS | 1054864 | 1054975 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000389 | protein folding, response to heat, unfolded protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 73 | 135 |
| PF01556.17 | DnaJ_C | 195 | 404 |
| PF01556.17 | DnaJ_C | 448 | 510 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006457 | protein folding |
| GO:0009408 | response to heat |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.