Annotation of co-expression genes

PH01000087G0240's details annotation

1.Annotation

ICBR annotation: elongation factor Tu, putative, expressed

Blast result AT5G10630 : 2.00E-177
Blast annotation: Translation elongation factor EF1A/initiation factor IF2gamma family protein

2.Location

Scaffold: PH01000087
Strand: +

RegionStartEnd
gene155305161581
mRNA155305161581
exon155305155727
exon156122156218
exon156380156535
exon156654156845
exon157454157552
exon157865157942
exon158329158663
exon158775158885
exon158981159471
exon159549159717
exon159994160233
exon160391160498
exon160588161581
CDS155575155727
CDS156122156218
CDS156380156535
CDS156654156845
CDS157454157552
CDS157865157942
CDS158329158663
CDS158775158885
CDS158981159471
CDS159549159717
CDS159994160233
CDS160391160498
CDS160588160716

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000889mRNA_surveillance_pathway
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00009.26GTP_EFTU365579
PF03143.16GTP_EFTU_D3707781

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
mRNA surveillance pathwayelongation factor 1 alpha-like proteinko03015K14416

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005622intracellular
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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