PH01000087G1340's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT5G37020 : 0.00E+00
Blast annotation: auxin response factor 8
2.Location
Scaffold: PH01000087
Strand: +
| Region | Start | End |
| gene | 1006773 | 1015491 |
| mRNA | 1006773 | 1015491 |
| exon | 1006773 | 1008208 |
| exon | 1008494 | 1008638 |
| exon | 1008773 | 1008871 |
| exon | 1008967 | 1009023 |
| exon | 1009123 | 1009278 |
| exon | 1009538 | 1009572 |
| exon | 1010493 | 1010657 |
| exon | 1010727 | 1010861 |
| exon | 1011131 | 1011206 |
| exon | 1011574 | 1011721 |
| exon | 1013680 | 1014665 |
| exon | 1014740 | 1015491 |
| CDS | 1008189 | 1008208 |
| CDS | 1008494 | 1008638 |
| CDS | 1008773 | 1008871 |
| CDS | 1008967 | 1009023 |
| CDS | 1009123 | 1009278 |
| CDS | 1009538 | 1009572 |
| CDS | 1010493 | 1010657 |
| CDS | 1010727 | 1010861 |
| CDS | 1011131 | 1011206 |
| CDS | 1011574 | 1011721 |
| CDS | 1013680 | 1014665 |
| CDS | 1014740 | 1014934 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001060 | response to hormone stimulus, RLK-Pelle_URK-1 (from iTAK) galactose metabolic process, nucleus, UDP-glucose 4-epimerase activity, protein dimerization activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06507.12 | Auxin_resp | 209 | 296 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.