PH01000087G1380's details annotation 1.Annotation ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result AT2G02160 : 5.20E-34 Blast annotation: CCCH-type zinc finger family protein 2.Location Scaffold: PH01000087 Strand: + Region | Start | End | gene | 1027734 | 1033345 | mRNA | 1027734 | 1033345 | exon | 1027734 | 1028260 | exon | 1030521 | 1033345 | CDS | 1028132 | 1028260 | CDS | 1030521 | 1032419 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM001635 | Ribosome translation, Ribosome intracellular, C3H Transcription_Regulator(from PlantTFDB)
| coexpression network | CFinderM001866 | sterol metabolic process, Steroid_biosynthesis cholestenol delta-isomerase activity, protein catabolic process, MYB_related Transcription_Regulator(from PlantTFDB) C3H Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK)
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family Category | Family | Transcription_Regulator(from iTAK) | C3H | Transcription_Regulator(from PlantTFDB) | C3H |
8.Protein domain Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start | PF00642.23 | zf-CCCH | 71 | 95 |
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0003676 | nucleic acid binding | GO:0008270 | zinc ion binding |
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