PH01000087G1640's details annotation
1.Annotation
ICBR annotation: phosphatidate cytidylyltransferase, putative, expressed
Blast result AT5G04490 : 6.90E-48
Blast annotation: vitamin E pathway gene 5
2.Location
Scaffold: PH01000087
Strand: -
| Region | Start | End |
| gene | 1158219 | 1160376 |
| mRNA | 1158219 | 1160376 |
| exon | 1158219 | 1158653 |
| exon | 1158749 | 1158863 |
| exon | 1158948 | 1159063 |
| exon | 1159911 | 1160376 |
| CDS | 1158467 | 1158653 |
| CDS | 1158749 | 1158863 |
| CDS | 1158948 | 1159063 |
| CDS | 1159911 | 1160017 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000979 | signal recognition particle, SRP-dependent cotranslational protein targeting to membrane, RNA metabolic process, Protein_export 7S RNA binding, RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.