Gene details

Annotation of co-expression genes

PH01000089G0510's details annotation

1.Annotation

ICBR annotation: CHIT1 - Chitinase family protein precursor, expressed

Blast result AT3G54420 : 7.90E-29
Blast annotation: homolog of carrot EP3-3 chitinase

2.Location

Scaffold: PH01000089
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000084	cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity,
coexpression network	CFinderM000159	chitin binding, chitin catabolic process, cell wall macromolecule catabolic process, chitinase activity, ATP binding, ATPase activity, SNARE_interactions_in_vesicular_transport carbohydrate metabolic process, protein phosphorylation, transport, transmembrane transport, RLK-Pelle_LRR-VIII-1 (from iTAK) RLK-Pelle_LRK10L-2 (from iTAK)
coexpression network	CFinderM000160	RLK-Pelle_LRK10L-2 (from iTAK) SNARE_interactions_in_vesicular_transport transport, cell wall macromolecule catabolic process, chitin catabolic process, transmembrane transport,
coexpression network	CFinderM000286	chitin binding, chitin catabolic process, cell wall macromolecule catabolic process, chitinase activity, Amino_sugar_and_nucleotide_sugar_metabolism carbohydrate metabolic process,
coexpression network	CFinderM000412	chitin binding, cell wall macromolecule catabolic process, chitin catabolic process, chitinase activity,
coexpression network	CFinderM001076	chitin catabolic process, cell wall macromolecule catabolic process, chitin binding, protein dephosphorylation,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0004568	chitinase activity
GO:0006032	chitin catabolic process
GO:0008061	chitin binding
GO:0016998	cell wall macromolecule catabolic process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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