PH01000089G0650's details annotation
1.Annotation
ICBR annotation: tRNA methyltransferase, putative
Blast result AT3G56120 : 9.00E-134
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000089
Strand: -
| Region | Start | End |
| gene | 447845 | 453574 |
| mRNA | 447845 | 453574 |
| exon | 447845 | 448413 |
| exon | 448566 | 448601 |
| exon | 449063 | 449137 |
| exon | 449293 | 449399 |
| exon | 450015 | 450164 |
| exon | 450357 | 450443 |
| exon | 450535 | 451057 |
| exon | 451464 | 451574 |
| exon | 452074 | 452147 |
| exon | 452269 | 452306 |
| exon | 452495 | 452540 |
| exon | 452589 | 452693 |
| exon | 453097 | 453194 |
| exon | 453324 | 453574 |
| CDS | 448300 | 448413 |
| CDS | 448566 | 448601 |
| CDS | 449063 | 449137 |
| CDS | 449293 | 449399 |
| CDS | 450015 | 450164 |
| CDS | 450357 | 450443 |
| CDS | 450535 | 451057 |
| CDS | 451464 | 451574 |
| CDS | 452074 | 452147 |
| CDS | 452269 | 452306 |
| CDS | 452495 | 452540 |
| CDS | 452589 | 452693 |
| CDS | 453097 | 453194 |
| CDS | 453324 | 453427 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000700 | GH63 Glycoside_Hydrolases RLK-Pelle_RLCK-XIII (from iTAK) oligosaccharide metabolic process, ubiquinone biosynthetic process, tRNA methylation, tRNA (guanine-N1-)-methyltransferase activity, mannosyl-oligosaccharide glucosidase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, monooxygenase activity, |
| coexpression network | CFinderM000975 | GTnc GlycosylTransferases tRNA (guanine-N1-)-methyltransferase activity, tRNA methylation, chitin catabolic process, cell wall macromolecule catabolic process, chaperone binding, chitinase activity, transferase activity, |
| coexpression network | CFinderM001638 | tRNA methylation, tRNA (guanine-N1-)-methyltransferase activity, proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001700 | leucine biosynthetic process, tRNA methylation, tRNA (guanine-N1-)-methyltransferase activity, 2-isopropylmalate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02475.15 | Met_10 | 131 | 193 |
| PF02475.15 | Met_10 | 197 | 467 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009019 | tRNA (guanine-N1-)-methyltransferase activity |
| GO:0016740 | transferase activity |
| GO:0030488 | tRNA methylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.