|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | tRNA methylation, | 0.01498016 | GO:0030488 | | tRNA (guanine-N1-)-methyltransferase activity, | 0.016708593 | GO:0009019 | | proton-transporting two-sector ATPase complex, proton-transporting domain, | 0.018200132 | GO:0033177 | | proton-transporting V-type ATPase, V0 domain, | 0.018200132 | GO:0033179 | | NAC Transcription_Regulator(from PlantTFDB) | 0.040869929 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000089G0650 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT3G56120 (9.00E-134) | | PH01000101G1130 | - | AT5G16610 (1.70E-82) | | PH01000238G0560 | Ras-related small GTP-binding family protein | AT3G62560 (7.10E-91) | | PH01000245G0100 | kinesin like protein for actin based chloroplast movement 2 | AT5G65460 (0.00E+00) | | PH01000871G0650 | Drug/metabolite transporter superfamily protein | AT2G25520 (6.00E-134) | | PH01000910G0290 | - | - (-) | | PH01000918G0260 | ATPase, F0/V0 complex, subunit C protein | AT1G19910 (1.40E-60) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000256 | signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM000379 | arginyl-tRNA aminoacylation,
arginine-tRNA ligase activity,
tRNA processing,
tRNA (guanine-N2-)-methyltransferase activity,
tRNA aminoacylation for protein translation,
double-stranded RNA binding,
| details | | CFinderM000389 | protein folding,
response to heat,
unfolded protein binding,
| details | | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM000658 | NAC Transcription_Regulator(from PlantTFDB)
heme oxidation,
heme oxygenase (decyclizing) activity,
hydrogen-translocating pyrophosphatase activity,
proton transport,
| details | | CFinderM000670 | NAC Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-III (from iTAK)
| details | | CFinderM000700 | GH63 Glycoside_Hydrolases
RLK-Pelle_RLCK-XIII (from iTAK)
oligosaccharide metabolic process,
ubiquinone biosynthetic process,
tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
mannosyl-oligosaccharide glucosidase activity,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen,
monooxygenase activity,
| details | | CFinderM000818 | SNF2 Transcription_Regulator(from iTAK)
GTP binding,
Protein_processing_in_endoplasmic_reticulum
intracellular protein transport,
| details | | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
| details | | CFinderM000975 | GTnc GlycosylTransferases
tRNA (guanine-N1-)-methyltransferase activity,
tRNA methylation,
chitin catabolic process,
cell wall macromolecule catabolic process,
chaperone binding,
chitinase activity,
transferase activity,
| details | | CFinderM001229 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
| details | | CFinderM001242 | mitotic_spindle_assembly_checkpoint
WASH_complex
PHD Transcription_Regulator(from iTAK)
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
| details | | CFinderM001402 | phosphatidylinositol-mediated signaling,
RNA 3'-end processing,
RNA polyadenylation,
phosphatidylinositol_biosynthetic_process
phosphatidylinositol phosphorylation,
1-phosphatidylinositol_4-kinase_activity
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
mRNA_surveillance_pathway
polynucleotide adenylyltransferase activity,
| details | | CFinderM001410 | PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,
| details | | CFinderM001411 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001581 | WASH_complex
DNA_ligation_involved_in_DNA_repair
drug_binding
DNA_ligase_activity
DNA ligase (ATP) activity,
DNA recombination,
DNA repair,
| details | | CFinderM001700 | leucine biosynthetic process,
tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
2-isopropylmalate synthase activity,
| details | | CFinderM001711 | intracellular protein transport,
binding,
| details | | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
| details | | CFinderM001789 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001799 | Various_types_of_N-glycan_biosynthesis
Base_excision_repair
N-Glycan_biosynthesis
nuclease activity,
endonuclease activity,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001830 | WASH_complex
drug_binding
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Butanoate_metabolism
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
| details | | CFinderM001841 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM001883 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
prephenate_dehydrogenase_activity
SNF2 Transcription_Regulator(from iTAK)
RNA_polymerase
| details |
4.Expression profilings |
