|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | proton-transporting two-sector ATPase complex, proton-transporting domain, | 0.000303454 | GO:0033177 | | proton-transporting V-type ATPase, V0 domain, | 0.000407476 | GO:0033179 | | SNF2 Transcription_Regulator(from iTAK) | 0.002670645 | GFam | | Phagosome | 0.003209315 | KEGG | | Oxidative_phosphorylation | 0.003209315 | KEGG | | ATP hydrolysis coupled proton transport, | 0.004098512 | GO:0015991 | | hydrogen ion transmembrane transporter activity, | 0.006321518 | GO:0015078 | | RB Transcription_Regulator(from iTAK) | 0.008846423 | GFam | | DDT Transcription_Regulator(from iTAK) | 0.014721946 | GFam | | clathrin coat of trans-Golgi network vesicle, | 0.017533802 | GO:0030130 | | clathrin coat of coated pit, | 0.017533802 | GO:0030132 | | mediator complex, | 0.0326318 | GO:0016592 | | PHD Transcription_Regulator(from iTAK) | 0.048171861 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000019G1620 | transcription regulatory protein SNF2, putative | AT2G46020 (0.00E+00) | | PH01000160G0460 | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | AT5G49680 (0.00E+00) | | PH01000287G0620 | RNA polymerase II transcription mediators | AT4G00450 (2.00E-149) | | PH01000359G0830 | vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 | AT1G75630 (1.60E-59) | | PH01000391G0300 | Helicase/SANT-associated, DNA binding protein | AT3G24880 (0.00E+00) | | PH01000633G0070 | Helicase/SANT-associated, DNA binding protein | AT3G24880 (1.00E-140) | | PH01000711G0660 | spermidine synthase 2 | AT1G70310 (8.80E-40) | | PH01000738G0090 | Nucleic acid-binding, OB-fold-like protein | AT2G04520 (3.50E-40) | | PH01000862G0160 | ATP-dependent helicase family protein | AT1G08060 (7.90E-93) | | PH01000918G0260 | ATPase, F0/V0 complex, subunit C protein | AT1G19910 (1.40E-60) | | PH01000957G0160 | metalloendopeptidases;zinc ion binding;DNA binding | AT5G35210 (6.70E-97) | | PH01001468G0430 | CTC-interacting domain 4 | AT3G14010 (1.30E-67) | | PH01001544G0050 | Clathrin light chain protein | AT2G20760 (1.00E-30) | | PH01002242G0120 | Heat shock protein DnaJ with tetratricopeptide repeat | AT5G12430 (1.30E-40) | | PH01002621G0030 | retinoblastoma-related 1 | AT3G12280 (0.00E+00) | | PH01002905G0260 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | AT3G14980 (1.00E-110) | | PH01004489G0070 | - | - (-) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000041 | Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
| details | | CFinderM000149 | SET Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
GTnc GlycosylTransferases
mitochondrial inner membrane,
exocyst,
| details | | CFinderM000226 | DDT Transcription_Regulator(from iTAK)
glycolysis,
fructose-bisphosphate aldolase activity,
Methane_metabolism
Carbon_fixation_in_photosynthetic_organisms
Pentose_phosphate_pathway
Fructose_and_mannose_metabolism
Glycolysis_/_Gluconeogenesis
| details | | CFinderM000256 | signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM000324 | pyridoxine biosynthetic process,
S-adenosylmethionine_biosynthetic_process
GT8 GlycosylTransferases
pyridoxamine-phosphate oxidase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
methionine adenosyltransferase activity,
| details | | CFinderM000471 | mediator complex,
PHD Transcription_Regulator(from iTAK)
cellular process,
regulation of transcription from RNA polymerase II promoter,
| details | | CFinderM000617 | SNF2 Transcription_Regulator(from iTAK)
helicase activity,
DNA binding,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
| details | | CFinderM000624 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000660 | Phagosome
mitochondrial inner membrane,
GTnc GlycosylTransferases
| details | | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
| details | | CFinderM001077 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001140 | RB Transcription_Regulator(from iTAK)
nucleus,
regulation_of_cell_cycle
SNF2 Transcription_Regulator(from iTAK)
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001334 | proton-transporting V-type ATPase, V0 domain,
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001337 | GT41 GlycosylTransferases
DDT Transcription_Regulator(from iTAK)
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
| details | | CFinderM001410 | PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,
| details | | CFinderM001411 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001638 | tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001664 | MYB_related Transcription_Regulator(from PlantTFDB)
GRAS Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001676 | Spliceosome
| details | | CFinderM001694 | TKL_CTR1-DRK-2 (from iTAK)
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
cytochrome-c oxidase activity,
histone acetyltransferase activity,
transcription cofactor activity,
| details | | CFinderM001789 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001796 | HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001797 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
mediator complex,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
MYB-related Transcription_Regulator(from iTAK)
RNA_polymerase_II_transcription_cofactor_activity
hydrogen ion transmembrane transporter activity,
Phagosome
Oxidative_phosphorylation
| details | | CFinderM001841 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM001876 | Spliceosome
| details |
4.Expression profilings |
