PH01000359G0830's details annotation
1.Annotation
ICBR annotation: vacuolar ATP synthase, putative, expressed
Blast result AT1G75630 : 1.60E-59
Blast annotation: vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
2.Location
Scaffold: PH01000359
Strand: -
| Region | Start | End |
| gene | 664269 | 669697 |
| mRNA | 664269 | 669697 |
| exon | 664269 | 664618 |
| exon | 667449 | 669697 |
| CDS | 664486 | 664618 |
| CDS | 667449 | 667816 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) Phagosome Oxidative_phosphorylation ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, RB Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, mediator complex, PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001334 | proton-transporting V-type ATPase, V0 domain, mediator complex, proton-transporting two-sector ATPase complex, proton-transporting domain, RNA metabolic process, regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00137.20 | ATP-synt_C | 18 | 77 |
| PF00137.20 | ATP-synt_C | 98 | 156 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | V-type H+-transporting ATPase 16kDa proteolipid subunit[EC:3.6.3.14] | ko00190 | K02155 |
| Phagosome | V-type H+-transporting ATPase 16kDa proteolipid subunit[EC:3.6.3.14] | ko04145 | K02155 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015078 | hydrogen ion transmembrane transporter activity |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain |
| GO:0033179 | proton-transporting V-type ATPase, V0 domain |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.