CFinderM001334's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
proton-transporting V-type ATPase, V0 domain,0.010802438GO:0033179
mediator complex,0.010802438GO:0016592
proton-transporting two-sector ATPase complex, proton-transporting domain,0.010802438GO:0033177
RNA metabolic process,0.043669446GO:0016070
regulation of transcription from RNA polymerase II promoter,0.043669446GO:0006357
ATP hydrolysis coupled proton transport,0.043669446GO:0015991

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000287G0620RNA polymerase II transcription mediatorsAT4G00450 (2.00E-149)
PH01000359G0830vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4AT1G75630 (1.60E-59)
PH01000391G0300Helicase/SANT-associated, DNA binding proteinAT3G24880 (0.00E+00)
PH01000652G0230Cox19-like CHCH family proteinAT5G09570 (4.70E-22)
PH01000778G0060Homeodomain-like transcriptional regulatorAT5G44180 (6.00E-158)
PH01000793G0180binding;RNA bindingAT2G39260 (0.00E+00)
PH01000862G0160ATP-dependent helicase family proteinAT1G08060 (7.90E-93)
PH01002351G0200ubiquitin-specific protease 5AT2G40930 (0.00E+00)
PH01006106G0050basic region/leucine zipper motif 53AT3G62420 (2.20E-28)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000005lipid transport,
AP2/ERF-ERF Transcription_Regulator(from iTAK)
ERF Transcription_Regulator(from PlantTFDB)
lipid binding,
ubiquitin thiolesterase activity,
details
CFinderM000007methylation,
nucleobase-containing compound metabolic process,
details
CFinderM000009ubiquitin thiolesterase activity,
Oxidative_phosphorylation
ubiquitin-dependent protein catabolic process,
details
CFinderM000015hexose_metabolic_process
extracellular region,
Glycolysis_/_Gluconeogenesis
details
CFinderM000021AGC_RSK-2 (from iTAK)
Pentose_and_glucuronate_interconversions
Retinol_metabolism
Drug_metabolism_-_other_enzymes
Metabolism_of_xenobiotics_by_cytochrome_P450
Ascorbate_and_aldarate_metabolism
Steroid_hormone_biosynthesis
Drug_metabolism_-_cytochrome_P450
Porphyrin_and_chlorophyll_metabolism
details
CFinderM000022basal lamina,
G-protein coupled acetylcholine receptor signaling pathway
receptor clustering,
Ribosome
laminin binding
translation,
intracellular,
structural constituent of ribosome,
details
CFinderM000041Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
details
CFinderM000045RLK-Pelle_LRR-VII-1 (from iTAK)
details
CFinderM000049vesicle docking involved in exocytosis,
Endocytosis
ubiquitin thiolesterase activity,
details
CFinderM000067GT57 GlycosylTransferases
mitochondrial_respiratory_chain_complex_III
endoplasmic reticulum membrane,
methylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
N-Glycan_biosynthesis
Oxidative_phosphorylation
nucleobase-containing compound metabolic process,
details
CFinderM000071Endocytosis
vesicle docking involved in exocytosis,
details
CFinderM000073BES1 Transcription_Regulator(from PlantTFDB)
large ribosomal subunit,
C2C2-GATA Transcription_Regulator(from iTAK)
GATA Transcription_Regulator(from PlantTFDB)
details
CFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,
details
CFinderM000096NF-X1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
Endocytosis
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
details
CFinderM000106PL1 Polysaccharide_Lyases
NF-YC Transcription_Regulator(from PlantTFDB)
ribonucleoprotein complex,
nucleolus,
cellulose biosynthetic process,
ribosome biogenesis,
details
CFinderM000132ubiquitin-dependent protein catabolic process,
phospholipid binding,
ubiquitin thiolesterase activity,
details
CFinderM000134mediator complex,
methylation,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM000135RLK-Pelle_CrRLK1L-1 (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
details
CFinderM000138RLK-Pelle_LRR-Xa (from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
details
CFinderM000142ZF-HD Transcription_Regulator(from PlantTFDB)
methylation,
nucleobase-containing compound metabolic process,
ubiquitin-dependent protein catabolic process,
details
CFinderM000147mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
GRAS Transcription_Regulator(from PlantTFDB)
Endocytosis
vesicle docking involved in exocytosis,
details
CFinderM000156cellular component organization,
actin cytoskeleton organization,
actin binding,
extracellular region,
RNA-dependent DNA replication,
details
CFinderM000166Ribosome
translation,
Ribosome
structural constituent of ribosome,
intracellular,
mitochondrial envelope,
cytochrome-c oxidase activity,
polysaccharide_binding
ubiquitin thiolesterase activity,
Oxidative_phosphorylation
ubiquitin-dependent protein catabolic process,
details
CFinderM000167riboflavin synthase activity,
Riboflavin_metabolism
vesicle docking involved in exocytosis,
riboflavin biosynthetic process,
details
CFinderM000198arginine decarboxylase activity,
vesicle docking involved in exocytosis,
spermidine biosynthetic process,
arginine catabolic process,
Endocytosis
RNA_degradation
details
CFinderM000211PL1 Polysaccharide_Lyases
RLK-Pelle_LRR-XI-1 (from iTAK)
RLK-Pelle_LRR-III (from iTAK)
ubiquitin-dependent protein catabolic process,
protein phosphorylation,
details
CFinderM000223details
CFinderM000241signal peptidase complex,
Protein_export
signal peptide processing,
details
CFinderM000276C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
Endocytosis
RLK-Pelle_LRR-III (from iTAK)
vesicle docking involved in exocytosis,
details
CFinderM000280BES1 Transcription_Regulator(from PlantTFDB)
ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
details
CFinderM000301HSF Transcription_Regulator(from PlantTFDB)
large ribosomal subunit,
RLK-Pelle_LRR-III (from iTAK)
Spliceosome
details
CFinderM000303HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
details
CFinderM000344signal peptidase complex,
Protein_export
methylation,
signal peptide processing,
nucleobase-containing compound metabolic process,
details
CFinderM000369translational elongation,
Ribosome
Ribosome
structural constituent of ribosome,
intracellular,
ubiquitin thiolesterase activity,
details
CFinderM000416basal lamina,
G-protein coupled acetylcholine receptor signaling pathway
receptor clustering,
laminin binding
nucleosome,
details
CFinderM000423Endocytosis
proteolysis,
vesicle docking involved in exocytosis,
details
CFinderM000476Oxidative_phosphorylation
mitochondrial envelope,
mitochondrial_respiratory_chain_complex_III
vesicle docking involved in exocytosis,
mitochondrial electron transport, ubiquinol to cytochrome c,
ATPase activity, coupled to transmembrane movement of substances,
ubiquitin thiolesterase activity,
Endocytosis
Phagosome
details
CFinderM000481proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
details
CFinderM000488microtubule,
protein complex,
structural constituent of cytoskeleton,
protein polymerization,
microtubule-based process,
Phagosome
GTP_catabolic_process
GTPase activity,
GTP binding,
adenosylhomocysteinase activity,
one-carbon metabolic process,
vesicle docking involved in exocytosis,
exocyst,
Cysteine_and_methionine_metabolism
ubiquitin thiolesterase activity,
details
CFinderM000491intracellular,
GDP-mannose metabolic process,
ubiquitin-dependent protein catabolic process,
intracellular transport,
GDP-mannose 4,6-dehydratase activity,
Ribosome
translation,
vesicle docking involved in exocytosis,
proteasome core complex, alpha-subunit complex,
proteasome core complex,
large ribosomal subunit,
Ribosome
proteolysis involved in cellular protein catabolic process,
structural constituent of ribosome,
endopeptidase activity,
threonine-type endopeptidase activity,
details
CFinderM000617SNF2 Transcription_Regulator(from iTAK)
helicase activity,
DNA binding,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
details
CFinderM000838Ribosome
translation,
structural constituent of ribosome,
methylation,
large ribosomal subunit,
intracellular,
nucleobase-containing compound metabolic process,
details
CFinderM001140RB Transcription_Regulator(from iTAK)
nucleus,
regulation_of_cell_cycle
SNF2 Transcription_Regulator(from iTAK)
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
details
CFinderM001337GT41 GlycosylTransferases
DDT Transcription_Regulator(from iTAK)
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
details
CFinderM001410PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,
details
CFinderM001411proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
details
CFinderM001797proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
mediator complex,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
MYB-related Transcription_Regulator(from iTAK)
RNA_polymerase_II_transcription_cofactor_activity
hydrogen ion transmembrane transporter activity,
Phagosome
Oxidative_phosphorylation
details

4.Expression profilings


Show details about module gene expression profiling