PH01000287G0620's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G00450 : 2.00E-149
Blast annotation: RNA polymerase II transcription mediators
2.Location
Scaffold: PH01000287
Strand: +
| Region | Start | End |
| gene | 391925 | 401192 |
| mRNA | 391925 | 401192 |
| exon | 391925 | 392543 |
| exon | 393668 | 393727 |
| exon | 393900 | 394005 |
| exon | 394223 | 394291 |
| exon | 395381 | 395434 |
| exon | 395535 | 395642 |
| exon | 396939 | 397088 |
| exon | 397175 | 397507 |
| exon | 397614 | 398922 |
| exon | 398980 | 399913 |
| exon | 400444 | 401192 |
| CDS | 392536 | 392543 |
| CDS | 393668 | 393727 |
| CDS | 393900 | 394005 |
| CDS | 394223 | 394291 |
| CDS | 395381 | 395434 |
| CDS | 395535 | 395642 |
| CDS | 396939 | 397088 |
| CDS | 397175 | 397507 |
| CDS | 397614 | 398922 |
| CDS | 398980 | 399913 |
| CDS | 400444 | 400555 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) Phagosome Oxidative_phosphorylation ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, RB Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, mediator complex, PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001334 | proton-transporting V-type ATPase, V0 domain, mediator complex, proton-transporting two-sector ATPase complex, proton-transporting domain, RNA metabolic process, regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001410 | PHD Transcription_Regulator(from iTAK) mediator complex, proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport, RNA metabolic process, zinc ion binding, protein binding, RNA_polymerase_II_transcription_cofactor_activity N-acetyltransferase_activity hydrogen ion transmembrane transporter activity, DNA binding, |
| coexpression network | CFinderM001797 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, mediator complex, regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport, MYB-related Transcription_Regulator(from iTAK) RNA_polymerase_II_transcription_cofactor_activity hydrogen ion transmembrane transporter activity, Phagosome Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09497.9 | Med12 | 119 | 179 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0001104 | RNA polymerase II transcription cofactor activity |
| GO:0006357 | regulation of transcription from RNA polymerase II promoter |
| GO:0016592 | mediator complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.