|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | PHD Transcription_Regulator(from iTAK) | 0.000161606 | GFam | | mediator complex, | 0.009605467 | GO:0016592 | | proton-transporting two-sector ATPase complex, proton-transporting domain, | 0.009605467 | GO:0033177 | | proton-transporting V-type ATPase, V0 domain, | 0.009605467 | GO:0033179 | | SNF2 Transcription_Regulator(from iTAK) | 0.018281653 | GFam | | regulation of transcription from RNA polymerase II promoter, | 0.018712562 | GO:0006357 | | ATP hydrolysis coupled proton transport, | 0.018712562 | GO:0015991 | | RNA metabolic process, | 0.018712562 | GO:0016070 | | zinc ion binding, | 0.049645355 | GO:0008270 | | protein binding, | 0.049645355 | GO:0005515 | | RNA_polymerase_II_transcription_cofactor_activity | 0.049645355 | GO:0001104 | | N-acetyltransferase_activity | 0.049645355 | GO:0008080 | | hydrogen ion transmembrane transporter activity, | 0.049645355 | GO:0015078 | | DNA binding, | 0.049645355 | GO:0003677 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000287G0620 | RNA polymerase II transcription mediators | AT4G00450 (2.00E-149) | | PH01000391G0300 | Helicase/SANT-associated, DNA binding protein | AT3G24880 (0.00E+00) | | PH01000410G0660 | Helicase/SANT-associated, DNA binding protein | AT3G24880 (8.00E-127) | | PH01000793G0180 | binding;RNA binding | AT2G39260 (0.00E+00) | | PH01000862G0160 | ATP-dependent helicase family protein | AT1G08060 (7.90E-93) | | PH01000918G0260 | ATPase, F0/V0 complex, subunit C protein | AT1G19910 (1.40E-60) | | PH01001808G0030 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | AT1G05380 (2.90E-98) | | PH01002905G0260 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | AT3G14980 (1.00E-110) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000256 | signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM000471 | mediator complex,
PHD Transcription_Regulator(from iTAK)
cellular process,
regulation of transcription from RNA polymerase II promoter,
| details | | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM000617 | SNF2 Transcription_Regulator(from iTAK)
helicase activity,
DNA binding,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
| details | | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
| details | | CFinderM001140 | RB Transcription_Regulator(from iTAK)
nucleus,
regulation_of_cell_cycle
SNF2 Transcription_Regulator(from iTAK)
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001334 | proton-transporting V-type ATPase, V0 domain,
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001337 | GT41 GlycosylTransferases
DDT Transcription_Regulator(from iTAK)
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
| details | | CFinderM001411 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001638 | tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001789 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001797 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
mediator complex,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
MYB-related Transcription_Regulator(from iTAK)
RNA_polymerase_II_transcription_cofactor_activity
hydrogen ion transmembrane transporter activity,
Phagosome
Oxidative_phosphorylation
| details | | CFinderM001841 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details |
4.Expression profilings |
