PH01000391G0300's details annotation
1.Annotation
ICBR annotation: DNA binding protein, putative, expressed
Blast result AT3G24880 : 0.00E+00
Blast annotation: Helicase/SANT-associated, DNA binding protein
2.Location
Scaffold: PH01000391
Strand: -
| Region | Start | End |
| gene | 242201 | 253432 |
| mRNA | 242201 | 253432 |
| exon | 242201 | 243567 |
| exon | 244495 | 244888 |
| exon | 244981 | 245196 |
| exon | 245324 | 245424 |
| exon | 245918 | 246034 |
| exon | 246239 | 246376 |
| exon | 246521 | 246601 |
| exon | 246684 | 246722 |
| exon | 247754 | 247834 |
| exon | 248365 | 248936 |
| exon | 249027 | 249087 |
| exon | 249487 | 249567 |
| exon | 249757 | 249942 |
| exon | 250219 | 250476 |
| exon | 251067 | 251186 |
| exon | 251278 | 252712 |
| exon | 252802 | 252899 |
| exon | 252971 | 253025 |
| exon | 253113 | 253432 |
| CDS | 242212 | 243567 |
| CDS | 244495 | 244888 |
| CDS | 244981 | 245196 |
| CDS | 245324 | 245424 |
| CDS | 245918 | 246034 |
| CDS | 246239 | 246376 |
| CDS | 246521 | 246601 |
| CDS | 246684 | 246722 |
| CDS | 247754 | 247834 |
| CDS | 248365 | 248936 |
| CDS | 249027 | 249087 |
| CDS | 249487 | 249567 |
| CDS | 249757 | 249942 |
| CDS | 250219 | 250476 |
| CDS | 251067 | 251186 |
| CDS | 251278 | 252712 |
| CDS | 252802 | 252899 |
| CDS | 252971 | 253025 |
| CDS | 253113 | 253201 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) Phagosome Oxidative_phosphorylation ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, RB Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, mediator complex, PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000617 | SNF2 Transcription_Regulator(from iTAK) helicase activity, DNA binding, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, |
| coexpression network | CFinderM001140 | RB Transcription_Regulator(from iTAK) nucleus, regulation_of_cell_cycle SNF2 Transcription_Regulator(from iTAK) Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism |
| coexpression network | CFinderM001334 | proton-transporting V-type ATPase, V0 domain, mediator complex, proton-transporting two-sector ATPase complex, proton-transporting domain, RNA metabolic process, regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001337 | GT41 GlycosylTransferases DDT Transcription_Regulator(from iTAK) proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, RNA metabolic process, |
| coexpression network | CFinderM001410 | PHD Transcription_Regulator(from iTAK) mediator complex, proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport, RNA metabolic process, zinc ion binding, protein binding, RNA_polymerase_II_transcription_cofactor_activity N-acetyltransferase_activity hydrogen ion transmembrane transporter activity, DNA binding, |
| coexpression network | CFinderM001411 | proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, RNA metabolic process, ATP hydrolysis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07529.12 | HSA | 576 | 613 |
| PF13921.5 | Myb_DNA-bind_6 | 1019 | 1082 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.