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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | proton-transporting V-type ATPase, V0 domain, | 0.012012087 | GO:0033179 | | proton-transporting two-sector ATPase complex, proton-transporting domain, | 0.012012087 | GO:0033177 | | RNA metabolic process, | 0.037236891 | GO:0016070 | | ATP hydrolysis coupled proton transport, | 0.037236891 | GO:0015991 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000018G2000 | Y-family DNA polymerase H | AT5G44740 (1.00E-177) | | PH01000238G0560 | Ras-related small GTP-binding family protein | AT3G62560 (7.10E-91) | | PH01000391G0300 | Helicase/SANT-associated, DNA binding protein | AT3G24880 (0.00E+00) | | PH01000410G0660 | Helicase/SANT-associated, DNA binding protein | AT3G24880 (8.00E-127) | | PH01000448G0350 | Structural maintenance of chromosomes (SMC) family protein | AT2G27170 (3.00E-105) | | PH01000793G0180 | binding;RNA binding | AT2G39260 (0.00E+00) | | PH01000918G0260 | ATPase, F0/V0 complex, subunit C protein | AT1G19910 (1.40E-60) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000256 | signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM000617 | SNF2 Transcription_Regulator(from iTAK)
helicase activity,
DNA binding,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
| details | | CFinderM000818 | SNF2 Transcription_Regulator(from iTAK)
GTP binding,
Protein_processing_in_endoplasmic_reticulum
intracellular protein transport,
| details | | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
| details | | CFinderM001140 | RB Transcription_Regulator(from iTAK)
nucleus,
regulation_of_cell_cycle
SNF2 Transcription_Regulator(from iTAK)
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001334 | proton-transporting V-type ATPase, V0 domain,
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001337 | GT41 GlycosylTransferases
DDT Transcription_Regulator(from iTAK)
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
| details | | CFinderM001410 | PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,
| details | | CFinderM001638 | tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001711 | intracellular protein transport,
binding,
| details | | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
| details | | CFinderM001789 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001841 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM001883 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
prephenate_dehydrogenase_activity
SNF2 Transcription_Regulator(from iTAK)
RNA_polymerase
| details |
4.Expression profilings |
