CFinderM001411's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
proton-transporting V-type ATPase, V0 domain,0.012012087GO:0033179
proton-transporting two-sector ATPase complex, proton-transporting domain,0.012012087GO:0033177
RNA metabolic process,0.037236891GO:0016070
ATP hydrolysis coupled proton transport,0.037236891GO:0015991

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000018G2000Y-family DNA polymerase HAT5G44740 (1.00E-177)
PH01000238G0560Ras-related small GTP-binding family proteinAT3G62560 (7.10E-91)
PH01000391G0300Helicase/SANT-associated, DNA binding proteinAT3G24880 (0.00E+00)
PH01000410G0660Helicase/SANT-associated, DNA binding proteinAT3G24880 (8.00E-127)
PH01000448G0350Structural maintenance of chromosomes (SMC) family proteinAT2G27170 (3.00E-105)
PH01000793G0180binding;RNA bindingAT2G39260 (0.00E+00)
PH01000918G0260ATPase, F0/V0 complex, subunit C proteinAT1G19910 (1.40E-60)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000256signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
details
CFinderM000481proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
details
CFinderM000617SNF2 Transcription_Regulator(from iTAK)
helicase activity,
DNA binding,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
details
CFinderM000818SNF2 Transcription_Regulator(from iTAK)
GTP binding,
Protein_processing_in_endoplasmic_reticulum
intracellular protein transport,
details
CFinderM000938proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
details
CFinderM001140RB Transcription_Regulator(from iTAK)
nucleus,
regulation_of_cell_cycle
SNF2 Transcription_Regulator(from iTAK)
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
details
CFinderM001334proton-transporting V-type ATPase, V0 domain,
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
details
CFinderM001337GT41 GlycosylTransferases
DDT Transcription_Regulator(from iTAK)
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
details
CFinderM001410PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,
details
CFinderM001638tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
details
CFinderM001711intracellular protein transport,
binding,
details
CFinderM001776Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
details
CFinderM001789proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,
details
CFinderM001841proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
details
CFinderM001883Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
prephenate_dehydrogenase_activity
SNF2 Transcription_Regulator(from iTAK)
RNA_polymerase
details

4.Expression profilings