Gene details

Annotation of co-expression genes

PH01000238G0560's details annotation

1.Annotation

ICBR annotation: miro, putative, expressed

Blast result AT3G62560 : 7.10E-91
Blast annotation: Ras-related small GTP-binding family protein

2.Location

Scaffold: PH01000238
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000818	SNF2 Transcription_Regulator(from iTAK) GTP binding, Protein_processing_in_endoplasmic_reticulum intracellular protein transport,
coexpression network	CFinderM001411	proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, RNA metabolic process, ATP hydrolysis coupled proton transport,
coexpression network	CFinderM001638	tRNA methylation, tRNA (guanine-N1-)-methyltransferase activity, proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, NAC Transcription_Regulator(from PlantTFDB)
coexpression network	CFinderM001711	intracellular protein transport, binding,
coexpression network	CFinderM001776	Protein_processing_in_endoplasmic_reticulum U4/U6_x_U5_tri-snRNP_complex intracellular protein transport, GTP binding, intracellular, nuclear mRNA splicing, via spliceosome, small GTPase mediated signal transduction,
coexpression network	CFinderM001841	proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain,
coexpression network	CFinderM001883	Phenylalanine,_tyrosine_and_tryptophan_biosynthesis tyrosine biosynthetic process, prephenate dehydrogenase (NADP+) activity, prephenate_dehydrogenase_activity SNF2 Transcription_Regulator(from iTAK) RNA_polymerase

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00025.20	Arf	8	192

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Protein processing in endoplasmic reticulum	GTP-binding protein SAR1 [EC:3.6.5.-]	ko04141	K07953

10.Gene Ontology

GO Accession	GO Annotation
GO:0005525	GTP binding
GO:0005622	intracellular
GO:0006886	intracellular protein transport

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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