|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | proton-transporting V-type ATPase, V0 domain, | 0.024934181 | GO:0033179 | | proton-transporting two-sector ATPase complex, proton-transporting domain, | 0.024934181 | GO:0033177 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000054G2100 | Lung seven transmembrane receptor family protein | AT5G18520 (5.00E-137) | | PH01000063G1940 | cell division cycle protein 48-related / CDC48-related | AT1G05910 (0.00E+00) | | PH01000238G0560 | Ras-related small GTP-binding family protein | AT3G62560 (7.10E-91) | | PH01000448G0350 | Structural maintenance of chromosomes (SMC) family protein | AT2G27170 (3.00E-105) | | PH01000918G0260 | ATPase, F0/V0 complex, subunit C protein | AT1G19910 (1.40E-60) | | PH01003168G0050 | binding | AT5G47690 (0.00E+00) | | PH01004917G0040 | SIN-like family protein | AT5G49530 (9.70E-60) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000256 | signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM000818 | SNF2 Transcription_Regulator(from iTAK)
GTP binding,
Protein_processing_in_endoplasmic_reticulum
intracellular protein transport,
| details | | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
| details | | CFinderM001410 | PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,
| details | | CFinderM001411 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001638 | tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001711 | intracellular protein transport,
binding,
| details | | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
| details | | CFinderM001778 | GT16 GlycosylTransferases
oligosaccharide biosynthetic process,
Golgi stack,
7-methylguanosine mRNA capping,
mRNA processing,
alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity,
mRNA guanylyltransferase activity,
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
binding,
| details | | CFinderM001789 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001883 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
prephenate_dehydrogenase_activity
SNF2 Transcription_Regulator(from iTAK)
RNA_polymerase
| details |
4.Expression profilings |
