|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | SNF2 Transcription_Regulator(from iTAK) | 0.009155108 | GFam | | GTP binding, | 0.026968281 | GO:0005525 | | Protein_processing_in_endoplasmic_reticulum | 0.040378107 | KEGG | | intracellular protein transport, | 0.04508028 | GO:0006886 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000056G1180 | chromatin remodeling 5 | AT2G13370 (2.00E-176) | | PH01000104G0980 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT2G22400 (5.50E-94) | | PH01000238G0560 | Ras-related small GTP-binding family protein | AT3G62560 (7.10E-91) | | PH01000289G1140 | - | AT2G32980 (6.20E-96) | | PH01001818G0160 | Tudor/PWWP/MBT domain-containing protein | AT3G63070 (6.60E-47) | | PH01002057G0210 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT4G10650 (1.10E-90) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000151 | SNF2 Transcription_Regulator(from iTAK)
response to oxidative stress,
ATP-dependent helicase activity,
helicase activity,
peroxidase activity,
heme binding,
oxidation-reduction process,
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
Methane_metabolism
nucleic acid binding,
| details | | CFinderM001316 | SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ATP-dependent helicase activity,
ATP binding,
monooxygenase activity,
fructose-bisphosphate aldolase activity,
DNA binding,
protein catabolic process,
| details | | CFinderM001411 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001638 | tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001711 | intracellular protein transport,
binding,
| details | | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
| details | | CFinderM001841 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM001883 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
prephenate_dehydrogenase_activity
SNF2 Transcription_Regulator(from iTAK)
RNA_polymerase
| details |
4.Expression profilings |
