PH01000056G1180's details annotation 1.Annotation ICBR annotation: SNF2 family N-terminal domain containing protein, expressed
Blast result AT2G13370 : 2.00E-176 Blast annotation: chromatin remodeling 5 2.Location Scaffold: PH01000056 Strand: - Region | Start | End | gene | 806565 | 814690 | mRNA | 806565 | 814690 | exon | 806565 | 806654 | exon | 806730 | 807002 | exon | 807103 | 807183 | exon | 807263 | 807441 | exon | 807716 | 807806 | exon | 807883 | 807972 | exon | 808261 | 808503 | exon | 808963 | 809043 | exon | 809129 | 809320 | exon | 809751 | 809840 | exon | 810143 | 810385 | exon | 811049 | 811258 | exon | 812217 | 812259 | exon | 812890 | 813014 | exon | 813134 | 813227 | exon | 813793 | 813860 | exon | 813949 | 814140 | exon | 814516 | 814690 | CDS | 806595 | 806654 | CDS | 806730 | 807002 | CDS | 807103 | 807183 | CDS | 807263 | 807441 | CDS | 807716 | 807806 | CDS | 807883 | 807972 | CDS | 808261 | 808503 | CDS | 808963 | 809043 | CDS | 809129 | 809320 | CDS | 809751 | 809840 | CDS | 810143 | 810385 | CDS | 811049 | 811258 | CDS | 812217 | 812259 | CDS | 812890 | 813014 | CDS | 813134 | 813227 | CDS | 813793 | 813860 | CDS | 813949 | 814140 | CDS | 814516 | 814617 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000151 | SNF2 Transcription_Regulator(from iTAK) response to oxidative stress, ATP-dependent helicase activity, helicase activity, peroxidase activity, heme binding, oxidation-reduction process, Phenylalanine_metabolism Phenylpropanoid_biosynthesis Methane_metabolism nucleic acid binding,
| coexpression network | CFinderM000818 | SNF2 Transcription_Regulator(from iTAK) GTP binding, Protein_processing_in_endoplasmic_reticulum intracellular protein transport,
| coexpression network | CFinderM001316 | SNF2 Transcription_Regulator(from iTAK) helicase activity, ATP-dependent helicase activity, ATP binding, monooxygenase activity, fructose-bisphosphate aldolase activity, DNA binding, protein catabolic process,
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family Category | Family | Transcription_Regulator(from iTAK) | SNF2 |
8.Protein domain
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0003676 | nucleic acid binding | GO:0003677 | DNA binding | GO:0004386 | helicase activity | GO:0005524 | ATP binding | GO:0008026 | ATP-dependent helicase activity |
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