PH01002057G0210's details annotation
1.Annotation
ICBR annotation: GTPase of unknown function domain containing protein, putative, expressed
Blast result AT4G10650 : 1.10E-90
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01002057
Strand: +
| Region | Start | End |
| gene | 124405 | 127099 |
| mRNA | 124405 | 127099 |
| exon | 124405 | 124810 |
| exon | 124912 | 125025 |
| exon | 125152 | 125229 |
| exon | 125369 | 125516 |
| exon | 125617 | 125687 |
| exon | 126115 | 126211 |
| exon | 126296 | 126465 |
| exon | 126601 | 127099 |
| CDS | 124673 | 124810 |
| CDS | 124912 | 125025 |
| CDS | 125152 | 125229 |
| CDS | 125369 | 125516 |
| CDS | 125617 | 125687 |
| CDS | 126115 | 126211 |
| CDS | 126296 | 126465 |
| CDS | 126601 | 126864 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000818 | SNF2 Transcription_Regulator(from iTAK) GTP binding, Protein_processing_in_endoplasmic_reticulum intracellular protein transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01926.22 | MMR_HSR1 | 133 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.