Gene details

Annotation of co-expression genes

PH01000793G0180's details annotation

1.Annotation

ICBR annotation: MIF4G domain containing protein, putative, expressed

Blast result AT2G39260 : 0.00E+00
Blast annotation: binding;RNA binding

2.Location

Scaffold: PH01000793
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001334	proton-transporting V-type ATPase, V0 domain, mediator complex, proton-transporting two-sector ATPase complex, proton-transporting domain, RNA metabolic process, regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport,
coexpression network	CFinderM001337	GT41 GlycosylTransferases DDT Transcription_Regulator(from iTAK) proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, RNA metabolic process,
coexpression network	CFinderM001410	PHD Transcription_Regulator(from iTAK) mediator complex, proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport, RNA metabolic process, zinc ion binding, protein binding, RNA_polymerase_II_transcription_cofactor_activity N-acetyltransferase_activity hydrogen ion transmembrane transporter activity, DNA binding,
coexpression network	CFinderM001411	proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, RNA metabolic process, ATP hydrolysis coupled proton transport,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
RNA transport	regulator of nonsense transcripts 2	ko03013	K14327
mRNA surveillance pathway	regulator of nonsense transcripts 2	ko03015	K14327

10.Gene Ontology

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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