CFinderM000106's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
PL1 Polysaccharide_Lyases0.005951447GFam
NF-YC Transcription_Regulator(from PlantTFDB)0.005951447GFam
ribonucleoprotein complex,0.016641942GO:0030529
nucleolus,0.016641942GO:0005730
cellulose biosynthetic process,0.038275116GO:0030244
ribosome biogenesis,0.038275116GO:0042254

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000018G1850-- (-)
PH01000339G0970Ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinAT5G20160 (6.70E-52)
PH01000373G0150Pathogenesis-related thaumatin superfamily proteinAT4G36010 (2.70E-67)
PH01000570G0730-- (-)
PH01002351G0200ubiquitin-specific protease 5AT2G40930 (0.00E+00)
PH01005298G0040nuclear factor Y, subunit C13AT5G43250 (1.20E-21)
PH01082021G0010cellulose synthase-like D5AT1G02730 (4.50E-28)
PH01161537G0010Pectin lyase-like superfamily proteinAT3G53190 (9.10E-91)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000005lipid transport,
AP2/ERF-ERF Transcription_Regulator(from iTAK)
ERF Transcription_Regulator(from PlantTFDB)
lipid binding,
ubiquitin thiolesterase activity,
details
CFinderM000007methylation,
nucleobase-containing compound metabolic process,
details
CFinderM000009ubiquitin thiolesterase activity,
Oxidative_phosphorylation
ubiquitin-dependent protein catabolic process,
details
CFinderM000015hexose_metabolic_process
extracellular region,
Glycolysis_/_Gluconeogenesis
details
CFinderM000021AGC_RSK-2 (from iTAK)
Pentose_and_glucuronate_interconversions
Retinol_metabolism
Drug_metabolism_-_other_enzymes
Metabolism_of_xenobiotics_by_cytochrome_P450
Ascorbate_and_aldarate_metabolism
Steroid_hormone_biosynthesis
Drug_metabolism_-_cytochrome_P450
Porphyrin_and_chlorophyll_metabolism
details
CFinderM000022basal lamina,
G-protein coupled acetylcholine receptor signaling pathway
receptor clustering,
Ribosome
laminin binding
translation,
intracellular,
structural constituent of ribosome,
details
CFinderM000041Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
details
CFinderM000045RLK-Pelle_LRR-VII-1 (from iTAK)
details
CFinderM000049vesicle docking involved in exocytosis,
Endocytosis
ubiquitin thiolesterase activity,
details
CFinderM000067GT57 GlycosylTransferases
mitochondrial_respiratory_chain_complex_III
endoplasmic reticulum membrane,
methylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
N-Glycan_biosynthesis
Oxidative_phosphorylation
nucleobase-containing compound metabolic process,
details
CFinderM000071Endocytosis
vesicle docking involved in exocytosis,
details
CFinderM000073BES1 Transcription_Regulator(from PlantTFDB)
large ribosomal subunit,
C2C2-GATA Transcription_Regulator(from iTAK)
GATA Transcription_Regulator(from PlantTFDB)
details
CFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,
details
CFinderM000096NF-X1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
Endocytosis
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
details
CFinderM000132ubiquitin-dependent protein catabolic process,
phospholipid binding,
ubiquitin thiolesterase activity,
details
CFinderM000134mediator complex,
methylation,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM000135RLK-Pelle_CrRLK1L-1 (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
details
CFinderM000138RLK-Pelle_LRR-Xa (from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
details
CFinderM000142ZF-HD Transcription_Regulator(from PlantTFDB)
methylation,
nucleobase-containing compound metabolic process,
ubiquitin-dependent protein catabolic process,
details
CFinderM000147mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
GRAS Transcription_Regulator(from PlantTFDB)
Endocytosis
vesicle docking involved in exocytosis,
details
CFinderM000156cellular component organization,
actin cytoskeleton organization,
actin binding,
extracellular region,
RNA-dependent DNA replication,
details
CFinderM000166Ribosome
translation,
Ribosome
structural constituent of ribosome,
intracellular,
mitochondrial envelope,
cytochrome-c oxidase activity,
polysaccharide_binding
ubiquitin thiolesterase activity,
Oxidative_phosphorylation
ubiquitin-dependent protein catabolic process,
details
CFinderM000167riboflavin synthase activity,
Riboflavin_metabolism
vesicle docking involved in exocytosis,
riboflavin biosynthetic process,
details
CFinderM000198arginine decarboxylase activity,
vesicle docking involved in exocytosis,
spermidine biosynthetic process,
arginine catabolic process,
Endocytosis
RNA_degradation
details
CFinderM000211PL1 Polysaccharide_Lyases
RLK-Pelle_LRR-XI-1 (from iTAK)
RLK-Pelle_LRR-III (from iTAK)
ubiquitin-dependent protein catabolic process,
protein phosphorylation,
details
CFinderM000223details
CFinderM000241signal peptidase complex,
Protein_export
signal peptide processing,
details
CFinderM000276C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
Endocytosis
RLK-Pelle_LRR-III (from iTAK)
vesicle docking involved in exocytosis,
details
CFinderM000280BES1 Transcription_Regulator(from PlantTFDB)
ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
details
CFinderM000301HSF Transcription_Regulator(from PlantTFDB)
large ribosomal subunit,
RLK-Pelle_LRR-III (from iTAK)
Spliceosome
details
CFinderM000303HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
details
CFinderM000344signal peptidase complex,
Protein_export
methylation,
signal peptide processing,
nucleobase-containing compound metabolic process,
details
CFinderM000369translational elongation,
Ribosome
Ribosome
structural constituent of ribosome,
intracellular,
ubiquitin thiolesterase activity,
details
CFinderM000416basal lamina,
G-protein coupled acetylcholine receptor signaling pathway
receptor clustering,
laminin binding
nucleosome,
details
CFinderM000423Endocytosis
proteolysis,
vesicle docking involved in exocytosis,
details
CFinderM000476Oxidative_phosphorylation
mitochondrial envelope,
mitochondrial_respiratory_chain_complex_III
vesicle docking involved in exocytosis,
mitochondrial electron transport, ubiquinol to cytochrome c,
ATPase activity, coupled to transmembrane movement of substances,
ubiquitin thiolesterase activity,
Endocytosis
Phagosome
details
CFinderM000488microtubule,
protein complex,
structural constituent of cytoskeleton,
protein polymerization,
microtubule-based process,
Phagosome
GTP_catabolic_process
GTPase activity,
GTP binding,
adenosylhomocysteinase activity,
one-carbon metabolic process,
vesicle docking involved in exocytosis,
exocyst,
Cysteine_and_methionine_metabolism
ubiquitin thiolesterase activity,
details
CFinderM000491intracellular,
GDP-mannose metabolic process,
ubiquitin-dependent protein catabolic process,
intracellular transport,
GDP-mannose 4,6-dehydratase activity,
Ribosome
translation,
vesicle docking involved in exocytosis,
proteasome core complex, alpha-subunit complex,
proteasome core complex,
large ribosomal subunit,
Ribosome
proteolysis involved in cellular protein catabolic process,
structural constituent of ribosome,
endopeptidase activity,
threonine-type endopeptidase activity,
details
CFinderM000838Ribosome
translation,
structural constituent of ribosome,
methylation,
large ribosomal subunit,
intracellular,
nucleobase-containing compound metabolic process,
details
CFinderM001334proton-transporting V-type ATPase, V0 domain,
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
details
CFinderM001337GT41 GlycosylTransferases
DDT Transcription_Regulator(from iTAK)
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples02468leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000018G1850PH01000339G0970PH01000373G0150PH01000570G0730PH01002351G0200PH01005298G0040PH01082021G0010PH01161537G0010Highcharts.com