PH01082021G0010's details annotation
1.Annotation
ICBR annotation: CSLD4 - cellulose synthase-like family D, expressed
Blast result AT1G02730 : 4.50E-28
Blast annotation: cellulose synthase-like D5
2.Location
Scaffold: PH01082021
Strand: -
| Region | Start | End |
| gene | 70 | 1202 |
| mRNA | 70 | 1202 |
| exon | 70 | 271 |
| exon | 892 | 1202 |
| CDS | 70 | 271 |
| CDS | 892 | 1202 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000106 | PL1 Polysaccharide_Lyases NF-YC Transcription_Regulator(from PlantTFDB) ribonucleoprotein complex, nucleolus, cellulose biosynthetic process, ribosome biogenesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14570.5 | zf-RING_4 | 14 | 44 |
| PF03552.13 | Cellulose_synt | 141 | 171 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016760 | cellulose synthase (UDP-forming) activity |
| GO:0030244 | cellulose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.