PH01000373G0150's details annotation
1.Annotation
ICBR annotation: thaumatin, putative, expressed
Blast result AT4G36010 : 2.70E-67
Blast annotation: Pathogenesis-related thaumatin superfamily protein
2.Location
Scaffold: PH01000373
Strand: +
| Region | Start | End |
| gene | 104170 | 105335 |
| mRNA | 104170 | 105335 |
| exon | 104170 | 104421 |
| exon | 104560 | 104989 |
| exon | 105146 | 105335 |
| CDS | 104367 | 104421 |
| CDS | 104560 | 104989 |
| CDS | 105146 | 105332 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000106 | PL1 Polysaccharide_Lyases NF-YC Transcription_Regulator(from PlantTFDB) ribonucleoprotein complex, nucleolus, cellulose biosynthetic process, ribosome biogenesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00314.16 | Thaumatin | 29 | 159 |
| PF00314.16 | Thaumatin | 163 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.