PH01161537G0010's details annotation
1.Annotation
ICBR annotation: pectate lyase precursor, putative, expressed
Blast result AT3G53190 : 9.10E-91
Blast annotation: Pectin lyase-like superfamily protein
2.Location
Scaffold: PH01161537
Strand: +
| Region | Start | End |
| gene | 144 | 770 |
| mRNA | 144 | 770 |
| exon | 144 | 770 |
| CDS | 144 | 770 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000106 | PL1 Polysaccharide_Lyases NF-YC Transcription_Regulator(from PlantTFDB) ribonucleoprotein complex, nucleolus, cellulose biosynthetic process, ribosome biogenesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Polysaccharide_Lyases | PL1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00544.18 | Pec_lyase_C | 98 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.