PH01000633G0070's details annotation
1.Annotation
ICBR annotation: DNA binding protein, putative, expressed
Blast result AT3G24880 : 1.00E-140
Blast annotation: Helicase/SANT-associated, DNA binding protein
2.Location
Scaffold: PH01000633
Strand: +
| Region | Start | End |
| gene | 73199 | 88264 |
| mRNA | 73199 | 88264 |
| exon | 73199 | 73524 |
| exon | 73604 | 73658 |
| exon | 73744 | 73841 |
| exon | 73931 | 75407 |
| exon | 75484 | 75603 |
| exon | 75739 | 75999 |
| exon | 76297 | 76482 |
| exon | 76689 | 76769 |
| exon | 77220 | 77280 |
| exon | 77366 | 77940 |
| exon | 78023 | 78076 |
| exon | 78464 | 78521 |
| exon | 78636 | 78820 |
| exon | 80205 | 80591 |
| exon | 81472 | 81525 |
| exon | 81606 | 81686 |
| exon | 81982 | 82143 |
| exon | 82401 | 82517 |
| exon | 83197 | 83297 |
| exon | 83435 | 83650 |
| exon | 83734 | 84127 |
| exon | 86490 | 88264 |
| CDS | 73388 | 73524 |
| CDS | 73604 | 73658 |
| CDS | 73744 | 73841 |
| CDS | 73931 | 75407 |
| CDS | 75484 | 75603 |
| CDS | 75739 | 75999 |
| CDS | 76297 | 76482 |
| CDS | 76689 | 76769 |
| CDS | 77220 | 77280 |
| CDS | 77366 | 77940 |
| CDS | 78023 | 78076 |
| CDS | 78464 | 78521 |
| CDS | 78636 | 78820 |
| CDS | 80205 | 80591 |
| CDS | 81472 | 81525 |
| CDS | 81606 | 81686 |
| CDS | 81982 | 82143 |
| CDS | 82401 | 82517 |
| CDS | 83197 | 83297 |
| CDS | 83435 | 83650 |
| CDS | 83734 | 84127 |
| CDS | 86490 | 87878 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000149 | SET Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) GTnc GlycosylTransferases mitochondrial inner membrane, exocyst, |
| coexpression network | CFinderM000226 | DDT Transcription_Regulator(from iTAK) glycolysis, fructose-bisphosphate aldolase activity, Methane_metabolism Carbon_fixation_in_photosynthetic_organisms Pentose_phosphate_pathway Fructose_and_mannose_metabolism Glycolysis_/_Gluconeogenesis |
| coexpression network | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) Phagosome Oxidative_phosphorylation ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, RB Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, mediator complex, PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000660 | Phagosome mitochondrial inner membrane, GTnc GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07529.12 | HSA | 606 | 647 |
| PF13921.5 | Myb_DNA-bind_6 | 1257 | 1316 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.