PH01001468G0430's details annotation
1.Annotation
ICBR annotation: ataxin-2 related protein, putative, expressed
Blast result AT3G14010 : 1.30E-67
Blast annotation: CTC-interacting domain 4
2.Location
Scaffold: PH01001468
Strand: +
| Region | Start | End |
| gene | 317217 | 324940 |
| mRNA | 317217 | 324940 |
| exon | 317217 | 318176 |
| exon | 321014 | 321160 |
| exon | 321234 | 321386 |
| exon | 321543 | 321673 |
| exon | 321797 | 321978 |
| exon | 322579 | 322756 |
| exon | 323010 | 323201 |
| exon | 324408 | 324940 |
| CDS | 318125 | 318176 |
| CDS | 321014 | 321160 |
| CDS | 321234 | 321386 |
| CDS | 321543 | 321673 |
| CDS | 321797 | 321978 |
| CDS | 322579 | 322756 |
| CDS | 323010 | 323201 |
| CDS | 324408 | 324536 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000041 | Oxidative_phosphorylation respiratory electron transport chain, mitochondrial inner membrane, |
| coexpression network | CFinderM000324 | pyridoxine biosynthetic process, S-adenosylmethionine_biosynthetic_process GT8 GlycosylTransferases pyridoxamine-phosphate oxidase activity, oxidoreductase activity, acting on the CH-NH2 group of donors, methionine adenosyltransferase activity, |
| coexpression network | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) Phagosome Oxidative_phosphorylation ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, RB Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, mediator complex, PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001140 | RB Transcription_Regulator(from iTAK) nucleus, regulation_of_cell_cycle SNF2 Transcription_Regulator(from iTAK) Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14438.5 | SM-ATX | 79 | 161 |
| PF06741.12 | LsmAD | 234 | 304 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.