|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Spliceosome | 0.008247177 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000064G1200 | SAP domain-containing protein | AT4G39680 (6.50E-83) | | PH01000129G0040 | ubiquitin-specific protease 26 | AT3G49600 (0.00E+00) | | PH01000160G0460 | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | AT5G49680 (0.00E+00) | | PH01000468G0950 | ribosomal protein L12-A | AT3G27830 (5.50E-32) | | PH01001653G0150 | BolA-like family protein | AT5G17560 (1.70E-32) | | PH01002960G0030 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | AT3G11960 (0.00E+00) | | PH01003054G0240 | alpha/beta-Hydrolases superfamily protein | AT3G48690 (5.10E-56) | | PH01003295G0200 | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | AT1G58250 (0) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000188 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM000617 | SNF2 Transcription_Regulator(from iTAK)
helicase activity,
DNA binding,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
| details | | CFinderM000624 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000845 | iron-sulfur cluster assembly,
| details | | CFinderM000914 | tetrapyrrole biosynthetic process,
glutamate-1-semialdehyde 2,1-aminomutase activity,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM001077 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001107 | clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
structural molecule activity,
vesicle-mediated transport,
mitochondrial_respiratory_chain_complex_III
intracellular protein transport,
mitochondrial electron transport, ubiquinol to cytochrome c,
negative regulation of catalytic activity,
identical protein binding,
| details | | CFinderM001342 | | details | | CFinderM001527 | PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
| details | | CFinderM001575 | protein methylation,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
methyltransferase activity,
| details | | CFinderM001590 | protein processing,
peroxiredoxin activity,
antioxidant activity,
integral to membrane,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_elongation
oxidoreductase activity, acting on the CH-CH group of donors,
double-stranded RNA binding,
ribonuclease III activity,
| details | | CFinderM001664 | MYB_related Transcription_Regulator(from PlantTFDB)
GRAS Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001691 | Spliceosome
Rab GTPase activator activity,
| details | | CFinderM001796 | HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001815 | | details | | CFinderM001838 | ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
| details | | CFinderM001864 | GH63 Glycoside_Hydrolases
oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
oxygen evolving complex,
photosystem II,
extrinsic to membrane,
Photosynthesis
| details | | CFinderM001876 | Spliceosome
| details |
4.Expression profilings |
