PH01000064G1200's details annotation
1.Annotation
ICBR annotation: SAP domain containing protein, expressed
Blast result AT4G39680 : 6.50E-83
Blast annotation: SAP domain-containing protein
2.Location
Scaffold: PH01000064
Strand: +
| Region | Start | End |
| gene | 724317 | 730284 |
| mRNA | 724317 | 730284 |
| exon | 724317 | 726450 |
| exon | 727155 | 727352 |
| exon | 727443 | 727594 |
| exon | 728705 | 728857 |
| exon | 729322 | 730284 |
| CDS | 724962 | 726450 |
| CDS | 727155 | 727352 |
| CDS | 727443 | 727594 |
| CDS | 728705 | 728857 |
| CDS | 729322 | 729798 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
| coexpression network | CFinderM000188 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000914 | tetrapyrrole biosynthetic process, glutamate-1-semialdehyde 2,1-aminomutase activity, ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001107 | clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, structural molecule activity, vesicle-mediated transport, mitochondrial_respiratory_chain_complex_III intracellular protein transport, mitochondrial electron transport, ubiquinol to cytochrome c, negative regulation of catalytic activity, identical protein binding, |
| coexpression network | CFinderM001342 | |
| coexpression network | CFinderM001590 | protein processing, peroxiredoxin activity, antioxidant activity, integral to membrane, Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_elongation oxidoreductase activity, acting on the CH-CH group of donors, double-stranded RNA binding, ribonuclease III activity, |
| coexpression network | CFinderM001676 | Spliceosome |
| coexpression network | CFinderM001815 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02037.26 | SAP | 13 | 42 |
| PF16294.4 | RSB_motif | 776 | 814 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | apoptotic chromatin condensation inducer in the nucleus | ko03041 | K12875 |
| RNA transport | apoptotic chromatin condensation inducer in the nucleus | ko03013 | K12875 |
| mRNA surveillance pathway | apoptotic chromatin condensation inducer in the nucleus | ko03015 | K12875 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.