PH01000160G0460's details annotation
1.Annotation
ICBR annotation: aberrant pollen transmission 1, putative, expressed
Blast result AT5G49680 : 0.00E+00
Blast annotation: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
2.Location
Scaffold: PH01000160
Strand: -
| Region | Start | End |
| gene | 365074 | 382954 |
| mRNA | 365074 | 382954 |
| exon | 365074 | 365100 |
| exon | 365450 | 365822 |
| exon | 366329 | 366477 |
| exon | 366566 | 366919 |
| exon | 367923 | 368093 |
| exon | 368159 | 368257 |
| exon | 370464 | 370688 |
| exon | 371539 | 371791 |
| exon | 372751 | 372869 |
| exon | 373007 | 373363 |
| exon | 379189 | 379289 |
| exon | 379447 | 381277 |
| exon | 381757 | 382004 |
| exon | 382166 | 382954 |
| CDS | 365095 | 365100 |
| CDS | 365450 | 365822 |
| CDS | 366329 | 366477 |
| CDS | 366566 | 366919 |
| CDS | 367923 | 368093 |
| CDS | 368159 | 368257 |
| CDS | 370464 | 370688 |
| CDS | 371539 | 371791 |
| CDS | 372751 | 372869 |
| CDS | 373007 | 373363 |
| CDS | 379189 | 379289 |
| CDS | 379447 | 381277 |
| CDS | 381757 | 382004 |
| CDS | 382166 | 382241 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, SNF2 Transcription_Regulator(from iTAK) Phagosome Oxidative_phosphorylation ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, RB Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, mediator complex, PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000617 | SNF2 Transcription_Regulator(from iTAK) helicase activity, DNA binding, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, |
| coexpression network | CFinderM000624 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001077 | SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001664 | MYB_related Transcription_Regulator(from PlantTFDB) GRAS Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001676 | Spliceosome |
| coexpression network | CFinderM001796 | HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001876 | Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10351.8 | Apt1 | 850 | 1070 |
| PF10351.8 | Apt1 | 1071 | 1328 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.