PH01002960G0030's details annotation
1.Annotation
ICBR annotation: cleavage and polyadenylation specificity factor, putative, expressed
Blast result AT3G11960 : 0.00E+00
Blast annotation: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
2.Location
Scaffold: PH01002960
Strand: +
| Region | Start | End |
| gene | 14012 | 23523 |
| mRNA | 14012 | 23523 |
| exon | 14012 | 16368 |
| exon | 17053 | 17187 |
| exon | 17316 | 17395 |
| exon | 18127 | 18210 |
| exon | 18938 | 19026 |
| exon | 19173 | 19308 |
| exon | 19403 | 21308 |
| exon | 21967 | 22277 |
| exon | 23194 | 23523 |
| CDS | 16144 | 16368 |
| CDS | 17053 | 17187 |
| CDS | 17316 | 17395 |
| CDS | 18127 | 18210 |
| CDS | 18938 | 19026 |
| CDS | 19173 | 19308 |
| CDS | 19403 | 21308 |
| CDS | 21967 | 22277 |
| CDS | 23194 | 23281 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001676 | Spliceosome |
| coexpression network | CFinderM001691 | Spliceosome Rab GTPase activator activity, |
| coexpression network | CFinderM001876 | Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10433.8 | MMS1_N | 126 | 678 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | splicing factor 3B subunit 3 | ko03041 | K12830 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.