PH01001653G0150's details annotation
1.Annotation
ICBR annotation: bolA, putative, expressed
Blast result AT5G17560 : 1.70E-32
Blast annotation: BolA-like family protein
2.Location
Scaffold: PH01001653
Strand: -
| Region | Start | End |
| gene | 83410 | 84633 |
| mRNA | 83410 | 84633 |
| exon | 83410 | 84107 |
| exon | 84242 | 84633 |
| CDS | 84036 | 84107 |
| CDS | 84242 | 84499 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001676 | Spliceosome |
| coexpression network | CFinderM001691 | Spliceosome Rab GTPase activator activity, |
| coexpression network | CFinderM001864 | GH63 Glycoside_Hydrolases oligosaccharide metabolic process, mannosyl-oligosaccharide glucosidase activity, oxygen evolving complex, photosystem II, extrinsic to membrane, Photosynthesis |
| coexpression network | CFinderM001876 | Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01722.17 | BolA | 101 | 154 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.