PH01000468G0950's details annotation
1.Annotation
ICBR annotation: ribosomal protein L7/L12 C-terminal domain containing protein, expressed
Blast result AT3G27830 : 5.50E-32
Blast annotation: ribosomal protein L12-A
2.Location
Scaffold: PH01000468
Strand: +
| Region | Start | End |
| gene | 637099 | 638803 |
| mRNA | 637099 | 638803 |
| exon | 637099 | 638803 |
| CDS | 637671 | 638210 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001676 | Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16320.4 | Ribosomal_L12_N | 52 | 100 |
| PF00542.18 | Ribosomal_L12 | 112 | 178 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L7/L12 | ko03011 | K02935 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.