PH01000093G1390's details annotation
1.Annotation
ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result AT3G21810 : 1.70E-40
Blast annotation: Zinc finger C-x8-C-x5-C-x3-H type family protein
2.Location
Scaffold: PH01000093
Strand: -
| Region | Start | End |
| gene | 856779 | 866516 |
| mRNA | 856779 | 866516 |
| exon | 856779 | 857052 |
| exon | 859476 | 859679 |
| exon | 859962 | 860158 |
| exon | 860543 | 860730 |
| exon | 860856 | 860927 |
| exon | 861038 | 861135 |
| exon | 863239 | 863295 |
| exon | 863376 | 863511 |
| exon | 864248 | 864281 |
| exon | 864428 | 864565 |
| exon | 866145 | 866516 |
| CDS | 856852 | 857052 |
| CDS | 859476 | 859679 |
| CDS | 859962 | 860158 |
| CDS | 860543 | 860730 |
| CDS | 860856 | 860927 |
| CDS | 861038 | 861135 |
| CDS | 863239 | 863295 |
| CDS | 863376 | 863511 |
| CDS | 864248 | 864281 |
| CDS | 864428 | 864565 |
| CDS | 866145 | 866301 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001229 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
| Transcription_Regulator(from PlantTFDB) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00642.23 | zf-CCCH | 11 | 34 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.