PH01000093G1750's details annotation
1.Annotation
ICBR annotation: growth regulator related protein, putative, expressed
Blast result AT3G26370 : 0.00E+00
Blast annotation: O-fucosyltransferase family protein
2.Location
Scaffold: PH01000093
Strand: -
| Region | Start | End |
| gene | 1106013 | 1111553 |
| mRNA | 1106013 | 1111553 |
| exon | 1106013 | 1106537 |
| exon | 1106740 | 1106931 |
| exon | 1107041 | 1107164 |
| exon | 1107305 | 1107448 |
| exon | 1107824 | 1107967 |
| exon | 1108182 | 1108298 |
| exon | 1109067 | 1109186 |
| exon | 1110192 | 1110280 |
| exon | 1110866 | 1110942 |
| exon | 1111240 | 1111553 |
| CDS | 1106175 | 1106537 |
| CDS | 1106740 | 1106931 |
| CDS | 1107041 | 1107164 |
| CDS | 1107305 | 1107448 |
| CDS | 1107824 | 1107967 |
| CDS | 1108182 | 1108298 |
| CDS | 1109067 | 1109186 |
| CDS | 1110192 | 1110280 |
| CDS | 1110866 | 1110942 |
| CDS | 1111240 | 1111264 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000133 | C2H2 Transcription_Regulator(from PlantTFDB) RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) carbohydrate phosphorylation, |
| coexpression network | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, |
| coexpression network | CFinderM001299 | SNARE_interactions_in_vesicular_transport Golgi vesicle transport, bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10250.8 | O-FucT | 19 | 190 |
| PF10250.8 | O-FucT | 200 | 398 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.